fivepseqfivepseq
         

fivepseq_merged

Input and run configurations

Main input:

Bam directory: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/processed/align_dedup_merged/*.bam
Bam files:
S14A_S14B_R136A
W303
ltv1
ubi3_ub
ubi3_ub_zuo1
zuo1
Genome file: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
Annotation file: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.94.gff3

Auxiliary files

Gene set file: None
Gene filter file: None

Other options

Output directory: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/fivepseq_merged/fivepseq_plots
Conflict mode: add
Span size: 100
Outlier detection p value [--op]: 0
Down-sampling constant [--ds] None
   

Summary statistics

SampleLibrary size (M)
S14A_S14B_R136A2.19686
W3032.39384
ltv12.51498
ubi3_ub1.82317
ubi3_ub_zuo13.95111
zuo12.39412
   

Report files

Main

Main report main/fivepseq_merged_main.html
Combined samples main/fivepseq_merged_combined.html

Supplement

Amino acid line-charts supplement/fivepseq_merged_amino_acid_linecharts.html
Codon line-charts: supplement/fivepseq_merged_codon_linecharts.html
Codon heatmaps: supplement/fivepseq_merged_codon_heatmaps.html

Gene sets

Compare samples in each gene-set None
Compare gene-sets in each sample None