Bam directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/old_processed/align_dedup_merged/*.bam |
Bam files: | rpl rpl_ssz rpl_zuo ssz wt zuo |
Genome file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa |
Annotation file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.94.gff3 |
Gene set file: | None |
Gene filter file: | None |
Output directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/fivepseq_old_merged/fivepseq_plots |
Conflict mode: | add |
Span size: | 100 |
Outlier detection p value [--op]: | 0 |
Down-sampling constant [--ds] | None |
Sample | Library size (M) |
---|---|
rpl | 1.77106 |
rpl_ssz | 1.30206 |
rpl_zuo | 2.76458 |
ssz | 2.73634 |
wt | 1.32000 |
zuo | 2.08298 |
Main report | main/fivepseq_old_merged_main.html |
Combined samples | main/fivepseq_old_merged_combined.html |
Amino acid line-charts | supplement/fivepseq_old_merged_amino_acid_linecharts.html |
Codon line-charts: | supplement/fivepseq_old_merged_codon_linecharts.html |
Codon heatmaps: | supplement/fivepseq_old_merged_codon_heatmaps.html |
Compare samples in each gene-set | None |
Compare gene-sets in each sample | None |