fivepseqfivepseq
         

fivepseq_old_merged

Input and run configurations

Main input:

Bam directory: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/old_processed/align_dedup_merged/*.bam
Bam files:
rpl
rpl_ssz
rpl_zuo
ssz
wt
zuo
Genome file: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
Annotation file: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.94.gff3

Auxiliary files

Gene set file: None
Gene filter file: None

Other options

Output directory: /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/fivepseq_old_merged/fivepseq_plots
Conflict mode: add
Span size: 100
Outlier detection p value [--op]: 0
Down-sampling constant [--ds] None
   

Summary statistics

SampleLibrary size (M)
rpl1.77106
rpl_ssz1.30206
rpl_zuo2.76458
ssz2.73634
wt1.32000
zuo2.08298
   

Report files

Main

Main report main/fivepseq_old_merged_main.html
Combined samples main/fivepseq_old_merged_combined.html

Supplement

Amino acid line-charts supplement/fivepseq_old_merged_amino_acid_linecharts.html
Codon line-charts: supplement/fivepseq_old_merged_codon_linecharts.html
Codon heatmaps: supplement/fivepseq_old_merged_codon_heatmaps.html

Gene sets

Compare samples in each gene-set None
Compare gene-sets in each sample None