| Bam directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/old_processed/align_dedup_merged/*.bam |
| Bam files: | rpl rpl_ssz rpl_zuo ssz wt zuo |
| Genome file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa |
| Annotation file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.94.gff3 |
| Gene set file: | None |
| Gene filter file: | None |
| Output directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/fivepseq_old_merged/fivepseq_plots |
| Conflict mode: | add |
| Span size: | 100 |
| Outlier detection p value [--op]: | 0 |
| Down-sampling constant [--ds] | None |
| Sample | Library size (M) |
|---|---|
| rpl | 1.77106 |
| rpl_ssz | 1.30206 |
| rpl_zuo | 2.76458 |
| ssz | 2.73634 |
| wt | 1.32000 |
| zuo | 2.08298 |
| Main report | main/fivepseq_old_merged_main.html |
| Combined samples | main/fivepseq_old_merged_combined.html |
| Amino acid line-charts | supplement/fivepseq_old_merged_amino_acid_linecharts.html |
| Codon line-charts: | supplement/fivepseq_old_merged_codon_linecharts.html |
| Codon heatmaps: | supplement/fivepseq_old_merged_codon_heatmaps.html |
| Compare samples in each gene-set | None |
| Compare gene-sets in each sample | None |