Bam directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/processed/align_dedup_merged/*.bam |
Bam files: | S14A_S14B_R136A W303 ltv1 ubi3_ub ubi3_ub_zuo1 zuo1 |
Genome file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa |
Annotation file: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/Saccharomyces_cerevisiae.R64-1-1.94.gff3 |
Gene set file: | None |
Gene filter file: | None |
Output directory: | /crex/proj/sllstore2017018/alisa/200212_HT5Pseq/fivepseq_merged/fivepseq_plots |
Conflict mode: | add |
Span size: | 100 |
Outlier detection p value [--op]: | 0 |
Down-sampling constant [--ds] | None |
Sample | Library size (M) |
---|---|
S14A_S14B_R136A | 2.19686 |
W303 | 2.39384 |
ltv1 | 2.51498 |
ubi3_ub | 1.82317 |
ubi3_ub_zuo1 | 3.95111 |
zuo1 | 2.39412 |
Main report | main/fivepseq_merged_main.html |
Combined samples | main/fivepseq_merged_combined.html |
Amino acid line-charts | supplement/fivepseq_merged_amino_acid_linecharts.html |
Codon line-charts: | supplement/fivepseq_merged_codon_linecharts.html |
Codon heatmaps: | supplement/fivepseq_merged_codon_heatmaps.html |
Compare samples in each gene-set | None |
Compare gene-sets in each sample | None |