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Local temporal Rac1-GTP nadirs and peaks restrict cell protrusions and retractions

dataset
posted on 25.11.2021, 09:17 by Jianjiang HuJianjiang Hu, Xiaowei Gong, Staffan Strömblad
Dataset used in the paper "Local temporal Rac1-GTP nadirs and peaks restrict cell protrusions and retractions".

The GTPase4.rar file contains the raw confocal images of HT1080 cell line stably expressing RhoA-2G or Rac-2G biosensors seeded on 6.9kPa polyacrylamid gel. Channel 1 and 2 are the FRET signals (excite 457nm, emission 482/35 nm and 525/50 nm). Channel 3 is the red fluorescent beads for the traction force calculation (by comparing to the corresponding cell free image file (containing "RL" in the file name)). Channel 4 is the transmission light for the cell morphology.

The Optogenetic.rar file contains the raw confocal images of HT1080 cell line stably expressing PA-Rac1(Q61L) or PA-Rac1(T17N) constructs perturbed by 488 nm light before and after 5 min imaging on the 6.9kPa polyacrylamide gel. Channel 1 is the PA-Rac1 constructs signal. Channel 2 is the far red fluorescent beads for the traction force calculation(by comparing to the corresponding cell free image file (containing "RL" in the file name)). The 3D collagen folder contains the representative raw confocal images of same stable HT1080 cell line seeded in the 3D collagen perturbed by 488 nm light before and after 5 min imaging.

The LLSM.rar file contains the representative lattice light sheet images of the HT1080 cell line stably expressing RhoA-2G or Rac1-2G biosensors seeded on the 6.9kPa polyacrylamide gel. The file is in .ims format which could be opened with Imaris software.

The WindowingResults.rar file contains the window sampled results from the GTPase4.rar and Optogenetic.rar.

The Codes.rar file contains the software and custom codes used in this study.

Funding

The Swedish Foundation for Strategic Research SB16-0046, Sysmic

The Swedish Research Council

The Swedish Cancer Society

KI Research Foundations 2020-01455

History

Publisher

Karolinska institutet

Contact email

jianjiang.hu@ki.se