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Improved computational analysis of ribosome dynamics from 5’P degradome data using fivepeseq

dataset
posted on 17.09.2020 by Vicent Pelechano, Lilit Nersisyan, Maria Ropat

Supplementary information for manuscript: "Improved computational analysis of ribosome dynamics from 5’P degradome data using fivepeseq" from Lilit Nersisyan, Maria Ropat and Vicent Pelechano (2020)


Dataset updated to fivepseq version1.0b6


5'P mRNA degradome datasets analyzed with fivepseq. (http://pelechanolab.com/software/fivepseq/). Raw Saccharomyces cerevisiae data is available from GEO under accession code GSE91064 and for Arabidopsis thaliana under accessions GSE72505 and GSE77549.

Funding

Ribosomal frameshifts as a novel mechanism to control RNA turnover in stress

European Commission

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Impact of transcriptome complexity on gene expression dynamics

Swedish Research Council

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Wallenberg Academy Fellowship (KAW 2016.0123)

Swedish Foundation’s Starting Grant (Ragnar Söderberg Foundation)

Karolinska Institutet (SciLifeLab Fellowship, SFO and KI funds)

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Karolinska Institute

Access request email

vicent.pelechano@scilifelab.se

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